EZStitcher

Getting Started

  • Getting Started with EZStitcher

User Guide

  • Introduction
  • Basic Usage
  • Intermediate Usage
  • Advanced Usage
  • Best Practices
  • Integrating EZStitcher with Other Tools

Core Concepts

  • Basic Microscopy Concepts
  • Architecture Overview
  • PipelineOrchestrator
  • Pipeline
  • Pipeline Factory
  • Step
  • Function Handling
  • ProcessingContext
  • Directory Structure

API Reference

  • API Reference

Development

  • Development
    • Architecture Overview
    • Extending EZStitcher
    • Testing
    • Contributing

Appendices

  • Appendices
EZStitcher
  • Development
  • View page source

Development

This section provides information for developers who want to contribute to EZStitcher.

  • Architecture Overview
    • Core Components
    • Design Principles
    • Data Flow
    • Directory Structure
    • Extension Points
  • Extending EZStitcher
    • Extending AutoPipelineFactory
    • When to Extend vs. Create Custom Pipelines
    • Adding a New Microscope Type
  • Testing
    • Test Organization
    • Running Tests
    • Test Coverage
    • Writing Tests
    • Generating Test Data
    • Mocking
    • Debugging Tests
  • Contributing
    • Setting Up Development Environment
    • Making Changes
    • Code Style
    • Documentation
    • Testing
    • Pull Request Process
    • Release Process
    • Code of Conduct
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