API Reference
=============

This section provides detailed API documentation for EZStitcher.

Core Components
--------------

.. toctree::
   :maxdepth: 2

   ez
   pipeline_orchestrator
   pipeline
   pipeline_factory
   steps
   stitcher
   focus_analyzer
   image_processor
   file_system_manager

Interfaces and Configuration
---------------------------

.. toctree::
   :maxdepth: 2

   microscope_interfaces
   config

Microscope Implementations
-------------------------

.. toctree::
   :maxdepth: 2

   microscopes