EZStitcher

Getting Started

  • Getting Started with EZStitcher

User Guide

  • Introduction
  • Basic Usage
  • Intermediate Usage
  • Advanced Usage
  • Best Practices
  • Integrating EZStitcher with Other Tools

Core Concepts

  • Basic Microscopy Concepts
  • Architecture Overview
  • PipelineOrchestrator
  • Pipeline
  • Pipeline Factory
  • Step
  • Function Handling
  • ProcessingContext
  • Directory Structure

API Reference

  • API Reference

Development

  • Development

Appendices

  • Appendices
    • Glossary
    • File Formats
    • Microscope Formats
EZStitcher
  • Appendices
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Appendices

This section provides additional reference material for EZStitcher.

  • Glossary
  • File Formats
    • Image File Formats
    • Position Files
    • Metadata Formats
    • Output File Structure
    • File Naming Conventions
  • Microscope Formats
    • ImageXpress
    • Opera Phenix
    • Automatic Detection
    • Adding Support for New Microscopes
    • Comparison of Microscope Formats
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