EZStitcher

Getting Started

  • Getting Started with EZStitcher

User Guide

  • Introduction
  • Basic Usage
  • Intermediate Usage
  • Advanced Usage
  • Best Practices
  • Integrating EZStitcher with Other Tools

Core Concepts

  • Basic Microscopy Concepts
  • Architecture Overview
  • PipelineOrchestrator
  • Pipeline
  • Pipeline Factory
  • Step
  • Function Handling
  • ProcessingContext
  • Directory Structure

API Reference

  • API Reference
    • Core Components
      • EZ Module
      • PipelineOrchestrator
      • Pipeline
      • Pipeline Factory
      • Steps
      • Stitcher
      • Focus Analyzer
      • Image Processor
      • File System Manager
    • Interfaces and Configuration
      • Microscope Interfaces
      • Configuration
    • Microscope Implementations
      • Microscope Implementations

Development

  • Development

Appendices

  • Appendices
EZStitcher
  • API Reference
  • View page source

API Reference

This section provides detailed API documentation for EZStitcher.

Core Components

  • EZ Module
    • EZStitcher Class
    • stitch_plate Function
  • PipelineOrchestrator
    • PipelineOrchestrator
    • Related Classes
  • Pipeline
    • Pipeline
    • ProcessingContext
    • Step Classes
  • Pipeline Factory
    • AutoPipelineFactory
  • Steps
    • Step
    • PositionGenerationStep
    • ImageStitchingStep
    • ZFlatStep
    • FocusStep
    • CompositeStep
  • Stitcher
    • Stitcher
    • StitcherConfig
  • Focus Analyzer
    • FocusAnalyzer
  • Image Processor
    • ImageProcessor
  • File System Manager
    • FileSystemManager

Interfaces and Configuration

  • Microscope Interfaces
    • MicroscopeHandler
    • FilenameParser
    • MetadataHandler
    • Functions
  • Configuration
    • PipelineConfig
    • StitcherConfig

Microscope Implementations

  • Microscope Implementations
    • ImageXpress
    • Opera Phenix
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